Located in mitochondrion. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for CXorf38. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = CXorf38 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of CXorf38, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chrX:40,474,058–40,474,871 | 173.1 kb | Distal (>10kb) Multiome | 312 | |
| chrX:40,580,460–40,581,260 | 66.7 kb | Distal (>10kb) Multiome | 548 | |
| chrX:40,647,095–40,647,843 | 89 bp | At TSS Multiome | 553 | |
| chrX:40,735,237–40,736,107 | 88.3 kb | Distal (>10kb) Multiome | 693 |
Genomic view of the CXorf38 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.