The protein encoded by this gene is a component of the PAF1 complex, which associates with RNA polymerase II and functions in transcriptional regulation and elongation. This complex also plays a role in the modification of histones. [provided by RefSeq, Oct 2016]
Transcription factors with Perturb-seq knockdown data for CTR9. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = CTR9 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of CTR9, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr11:9,572,794–9,575,580 | 1175.7 kb | Distal (>10kb) Multiome HiCAR | 1075 | |
| chr11:10,450,400–10,451,424 | 300.0 kb | Distal (>10kb) Multiome | 419 | |
| chr11:10,455,858–10,456,376 | 295.0 kb | Distal (>10kb) Multiome | 394 | |
| chr11:10,540,488–10,541,619 | 209.8 kb | Distal (>10kb) Multiome | 859 | |
| chr11:10,735,514–10,736,088 | 15.1 kb | Distal (>10kb) Multiome | 637 | |
| chr11:10,750,622–10,751,770 | 115 bp | At TSS Multiome | 974 | |
| chr11:10,792,316–10,792,962 | 41.6 kb | Distal (>10kb) Multiome | 530 | |
| chr11:10,807,818–10,809,752 | 58.0 kb | Distal (>10kb) Multiome | 1038 | |
| chr11:10,857,279–10,858,931 | 107.1 kb | Distal (>10kb) Multiome | 958 | |
| chr11:10,930,673–10,932,142 | 180.3 kb | Distal (>10kb) Multiome | 512 | |
| chr11:10,933,806–10,934,381 | 183.1 kb | Distal (>10kb) Multiome | 447 |
Genomic view of the CTR9 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.