The cystatin superfamily encompasses proteins that contain multiple cystatin-like sequences. Some of the members are active cysteine protease inhibitors, while others have lost or perhaps never acquired this inhibitory activity. There are three inhibitory families in the superfamily, including the type 1 cystatins (stefins), type 2 cystatins and kininogens. This gene encodes a stefin that functions as an intracellular thiol protease inhibitor. The protein is able to form a dimer stabilized by noncovalent forces, inhibiting papain and cathepsins l, h and b. The protein is thought to play a role in protecting against the proteases leaking from lysosomes. Evidence indicates that mutations in this gene are responsible for the primary defects in patients with progressive myoclonic epilepsy (EPM1). One type of mutation responsible for EPM1 is the expansion in the promoter region of this gene of a CCCCGCCCCGCG repeat from 2-3 copies to 30-78 copies. [provided by RefSeq, Jul 2016]
Transcription factors with Perturb-seq knockdown data for CSTB. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = CSTB upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of CSTB, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr21:43,659,125–43,659,916 | 116.7 kb | Distal (>10kb) Multiome | 989 | |
| chr21:43,718,478–43,719,766 | 57.2 kb | Distal (>10kb) Multiome | 782 | |
| chr21:43,728,503–43,729,213 | 47.5 kb | Distal (>10kb) Multiome | 905 | |
| chr21:43,740,577–43,741,104 | 35.4 kb | Distal (>10kb) Multiome | 198 | |
| chr21:43,775,786–43,776,893 | 113 bp | At TSS Multiome | 782 | |
| chr21:43,788,879–43,790,067 | 13.1 kb | Distal (>10kb) Multiome | 930 | |
| chr21:43,864,215–43,864,709 | 88.0 kb | Distal (>10kb) Multiome | 538 | |
| chr21:43,865,135–43,865,798 | 89.2 kb | Distal (>10kb) Multiome | 333 | |
| chr21:43,883,997–43,884,476 | 108.0 kb | Distal (>10kb) Multiome | 418 | |
| chr21:43,921,393–43,922,764 | 145.6 kb | Distal (>10kb) Multiome | 622 | |
| chr21:44,011,848–44,013,192 | 236.3 kb | Distal (>10kb) Multiome | 873 |
Genomic view of the CSTB locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.