CSTB
cystatin B | CST6, PME, EPM1, STFB

The cystatin superfamily encompasses proteins that contain multiple cystatin-like sequences. Some of the members are active cysteine protease inhibitors, while others have lost or perhaps never acquired this inhibitory activity. There are three inhibitory families in the superfamily, including the type 1 cystatins (stefins), type 2 cystatins and kininogens. This gene encodes a stefin that functions as an intracellular thiol protease inhibitor. The protein is able to form a dimer stabilized by noncovalent forces, inhibiting papain and cathepsins l, h and b. The protein is thought to play a role in protecting against the proteases leaking from lysosomes. Evidence indicates that mutations in this gene are responsible for the primary defects in patients with progressive myoclonic epilepsy (EPM1). One type of mutation responsible for EPM1 is the expansion in the promoter region of this gene of a CCCCGCCCCGCG repeat from 2-3 copies to 30-78 copies. [provided by RefSeq, Jul 2016]

Member of: DE-1
Biological processes 27 terms
Expression (TPM)
CSTB — as a Regulated Gene

TFs regulating CSTB 0 TFs

Transcription factors with Perturb-seq knockdown data for CSTB. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = CSTB upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to CSTB

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of CSTB, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr21:43,659,125–43,659,916 116.7 kb Distal (>10kb) Multiome 989
chr21:43,718,478–43,719,766 57.2 kb Distal (>10kb) Multiome 782
chr21:43,728,503–43,729,213 47.5 kb Distal (>10kb) Multiome 905
chr21:43,740,577–43,741,104 35.4 kb Distal (>10kb) Multiome 198
chr21:43,775,786–43,776,893 113 bp At TSS Multiome 782
chr21:43,788,879–43,790,067 13.1 kb Distal (>10kb) Multiome 930
chr21:43,864,215–43,864,709 88.0 kb Distal (>10kb) Multiome 538
chr21:43,865,135–43,865,798 89.2 kb Distal (>10kb) Multiome 333
chr21:43,883,997–43,884,476 108.0 kb Distal (>10kb) Multiome 418
chr21:43,921,393–43,922,764 145.6 kb Distal (>10kb) Multiome 622
chr21:44,011,848–44,013,192 236.3 kb Distal (>10kb) Multiome 873

Genome Browser

Genomic view of the CSTB locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr21:43,649,125 – 44,023,192
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq