Predicted to enable actin filament binding activity. Predicted to be involved in negative regulation of cell population proliferation. Predicted to act upstream of or within neuron projection development. Predicted to be located in membrane. Predicted to be part of meiotic nuclear membrane microtubule tethering complex. Predicted to be active in cytoplasm and nuclear outer membrane. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for CLMN. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = CLMN upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of CLMN, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr14:95,156,655–95,158,127 | 162.4 kb | Distal (>10kb) Multiome | 838 | |
| chr14:95,291,132–95,291,627 | 28.5 kb | Distal (>10kb) Multiome | 174 | |
| chr14:95,319,274–95,320,393 | 18 bp | At TSS Multiome | 440 | |
| chr14:95,514,691–95,515,550 | 195.2 kb | Distal (>10kb) Multiome | 307 | |
| chr14:95,516,090–95,517,032 | 196.5 kb | Distal (>10kb) Multiome | 555 | |
| chr14:95,534,312–95,535,544 | 214.9 kb | Distal (>10kb) Multiome | 854 |
Genomic view of the CLMN locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.