CEACAM1
CEA cell adhesion molecule 1 | BGP1, CD66a, BGP

This gene encodes a member of the carcinoembryonic antigen (CEA) gene family, which belongs to the immunoglobulin superfamily. Two subgroups of the CEA family, the CEA cell adhesion molecules and the pregnancy-specific glycoproteins, are located within a 1.2 Mb cluster on the long arm of chromosome 19. Eleven pseudogenes of the CEA cell adhesion molecule subgroup are also found in the cluster. The encoded protein was originally described in bile ducts of liver as biliary glycoprotein. Subsequently, it was found to be a cell-cell adhesion molecule detected on leukocytes, epithelia, and endothelia. The encoded protein mediates cell adhesion via homophilic as well as heterophilic binding to other proteins of the subgroup. Multiple cellular activities have been attributed to the encoded protein, including roles in the differentiation and arrangement of tissue three-dimensional structure, angiogenesis, apoptosis, tumor suppression, metastasis, and the modulation of innate and adaptive immune responses. Multiple transcript variants encoding different isoforms have been reported, but the full-length nature of all variants has not been defined. [provided by RefSeq, May 2010]

Biological processes 83 terms
T cell receptor complex (GO:0042101)actin binding (GO:0003779)adherens junction (GO:0005912)adherens junction (GO:0005912)anchoring junction (GO:0070161)angiogenesis (GO:0001525)apical plasma membrane (GO:0016324)apical plasma membrane (GO:0016324)apical plasma membrane (GO:0016324)basal plasma membrane (GO:0009925)basal plasma membrane (GO:0009925)bile acid and bile salt transport (GO:0015721)bile acid transmembrane transporter activity (GO:0015125)blood vessel development (GO:0001568)calmodulin binding (GO:0005516)cell adhesion (GO:0007155)cell junction (GO:0030054)cell junction (GO:0030054)cell migration (GO:0016477)cell surface (GO:0009986)cell surface (GO:0009986)cell surface (GO:0009986)cell-cell adhesion (GO:0098609)cell-cell junction (GO:0005911)cellular response to insulin stimulus (GO:0032869)common myeloid progenitor cell proliferation (GO:0035726)extracellular exosome (GO:0070062)extracellular region (GO:0005576)filamin binding (GO:0031005)granulocyte colony-stimulating factor signaling pathway (GO:0038158)homophilic cell-cell adhesion (GO:0007156)homophilic cell-cell adhesion (GO:0007156)identical protein binding (GO:0042802)identical protein binding (GO:0042802)insulin catabolic process (GO:1901143)insulin receptor internalization (GO:0038016)integrin-mediated signaling pathway (GO:0007229)kinase binding (GO:0019900)lateral plasma membrane (GO:0016328)lateral plasma membrane (GO:0016328)membrane (GO:0016020)membrane (GO:0016020)microvillus membrane (GO:0031528)negative regulation of T cell mediated cytotoxicity (GO:0001915)negative regulation of T cell receptor signaling pathway (GO:0050860)negative regulation of cytotoxic T cell degranulation (GO:0043318)negative regulation of fatty acid biosynthetic process (GO:0045717)negative regulation of granulocyte differentiation (GO:0030853)negative regulation of hepatocyte proliferation (GO:2000346)negative regulation of interleukin-1 production (GO:0032692)negative regulation of lipid biosynthetic process (GO:0051055)negative regulation of natural killer cell mediated cytotoxicity directed against tumor cell target (GO:0002859)negative regulation of platelet aggregation (GO:0090331)negative regulation of protein kinase activity (GO:0006469)negative regulation of vascular permeability (GO:0043116)plasma membrane (GO:0005886)plasma membrane (GO:0005886)plasma membrane (GO:0005886)plasma membrane (GO:0005886)plasma membrane (GO:0005886)positive regulation of vasculogenesis (GO:2001214)protein binding (GO:0005515)protein dimerization activity (GO:0046983)protein homodimerization activity (GO:0042803)protein phosphatase binding (GO:0019903)protein tyrosine kinase binding (GO:1990782)protein tyrosine kinase binding (GO:1990782)regulation of ERK1 and ERK2 cascade (GO:0070372)regulation of blood vessel remodeling (GO:0060312)regulation of cell growth (GO:0001558)regulation of cell migration (GO:0030334)regulation of endothelial cell differentiation (GO:0045601)regulation of endothelial cell migration (GO:0010594)regulation of epidermal growth factor receptor signaling pathway (GO:0042058)regulation of homophilic cell adhesion (GO:1903385)regulation of immune system process (GO:0002682)regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (GO:0051896)regulation of sprouting angiogenesis (GO:1903670)signal transduction (GO:0007165)specific granule membrane (GO:0035579)tertiary granule membrane (GO:0070821)transport vesicle membrane (GO:0030658)wound healing, spreading of cells (GO:0044319)
Expression (TPM)
CEACAM1 — as a Regulated Gene

TFs regulating CEACAM1 0 TFs

Transcription factors with Perturb-seq knockdown data for CEACAM1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = CEACAM1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to CEACAM1

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of CEACAM1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr19:42,241,985–42,243,820 285.5 kb Distal (>10kb) Multiome 891
chr19:42,244,086–42,245,258 283.6 kb Distal (>10kb) Multiome 768
chr19:42,253,030–42,256,178 274.6 kb Distal (>10kb) Multiome 900
chr19:42,267,812–42,269,463 259.6 kb Distal (>10kb) Multiome 887
chr19:42,279,620–42,280,909 248.4 kb Distal (>10kb) Multiome 818
chr19:42,283,173–42,285,280 244.4 kb Distal (>10kb) Multiome 739
chr19:42,301,842–42,303,114 225.8 kb Distal (>10kb) Multiome 858
chr19:42,313,206–42,313,892 214.9 kb Distal (>10kb) Multiome 515
chr19:42,323,530–42,326,402 202.9 kb Distal (>10kb) Multiome 833
chr19:42,386,878–42,387,621 141.1 kb Distal (>10kb) Multiome 602
chr19:42,396,430–42,397,663 131.4 kb Distal (>10kb) Multiome 585
chr19:42,401,221–42,402,278 126.7 kb Distal (>10kb) Multiome 475
chr19:42,422,934–42,424,367 104.7 kb Distal (>10kb) Multiome 439
chr19:42,529,159–42,529,744 710 bp At TSS 400
chr19:43,594,710–43,596,874 1067.9 kb Distal (>10kb) Multiome HiCAR 998

Genome Browser

Genomic view of the CEACAM1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr19:42,231,985 – 43,606,874
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq