This gene encodes a member of the carcinoembryonic antigen (CEA) gene family, which belongs to the immunoglobulin superfamily. Two subgroups of the CEA family, the CEA cell adhesion molecules and the pregnancy-specific glycoproteins, are located within a 1.2 Mb cluster on the long arm of chromosome 19. Eleven pseudogenes of the CEA cell adhesion molecule subgroup are also found in the cluster. The encoded protein was originally described in bile ducts of liver as biliary glycoprotein. Subsequently, it was found to be a cell-cell adhesion molecule detected on leukocytes, epithelia, and endothelia. The encoded protein mediates cell adhesion via homophilic as well as heterophilic binding to other proteins of the subgroup. Multiple cellular activities have been attributed to the encoded protein, including roles in the differentiation and arrangement of tissue three-dimensional structure, angiogenesis, apoptosis, tumor suppression, metastasis, and the modulation of innate and adaptive immune responses. Multiple transcript variants encoding different isoforms have been reported, but the full-length nature of all variants has not been defined. [provided by RefSeq, May 2010]
Transcription factors with Perturb-seq knockdown data for CEACAM1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = CEACAM1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of CEACAM1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr19:42,241,985–42,243,820 | 285.5 kb | Distal (>10kb) Multiome | 891 | |
| chr19:42,244,086–42,245,258 | 283.6 kb | Distal (>10kb) Multiome | 768 | |
| chr19:42,253,030–42,256,178 | 274.6 kb | Distal (>10kb) Multiome | 900 | |
| chr19:42,267,812–42,269,463 | 259.6 kb | Distal (>10kb) Multiome | 887 | |
| chr19:42,279,620–42,280,909 | 248.4 kb | Distal (>10kb) Multiome | 818 | |
| chr19:42,283,173–42,285,280 | 244.4 kb | Distal (>10kb) Multiome | 739 | |
| chr19:42,301,842–42,303,114 | 225.8 kb | Distal (>10kb) Multiome | 858 | |
| chr19:42,313,206–42,313,892 | 214.9 kb | Distal (>10kb) Multiome | 515 | |
| chr19:42,323,530–42,326,402 | 202.9 kb | Distal (>10kb) Multiome | 833 | |
| chr19:42,386,878–42,387,621 | 141.1 kb | Distal (>10kb) Multiome | 602 | |
| chr19:42,396,430–42,397,663 | 131.4 kb | Distal (>10kb) Multiome | 585 | |
| chr19:42,401,221–42,402,278 | 126.7 kb | Distal (>10kb) Multiome | 475 | |
| chr19:42,422,934–42,424,367 | 104.7 kb | Distal (>10kb) Multiome | 439 | |
| chr19:42,529,159–42,529,744 | 710 bp | At TSS | 400 | |
| chr19:43,594,710–43,596,874 | 1067.9 kb | Distal (>10kb) Multiome HiCAR | 998 |
Genomic view of the CEACAM1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.