CDH24

cadherin 24 | CDH11L

Enables several functions, including alpha-catenin binding activity; beta-catenin binding activity; and delta-catenin binding activity. Acts upstream of or within cell-cell adhesion. Located in cell-cell junction. [provided by Alliance of Genome Resources, Jul 2025]

Biological processes 24 terms

adherens junction (GO:0005912)adherens junction organization (GO:0034332)alpha-catenin binding (GO:0045294)beta-catenin binding (GO:0008013)beta-catenin binding (GO:0008013)cadherin binding (GO:0045296)calcium ion binding (GO:0005509)calcium ion binding (GO:0005509)calcium-dependent cell-cell adhesion (GO:0016339)catenin complex (GO:0016342)cell adhesion (GO:0007155)cell migration (GO:0016477)cell morphogenesis (GO:0000902)cell-cell adhesion (GO:0098609)cell-cell adhesion (GO:0098609)cell-cell adhesion (GO:0098609)cell-cell adhesion mediated by cadherin (GO:0044331)cell-cell junction (GO:0005911)cell-cell junction assembly (GO:0007043)delta-catenin binding (GO:0070097)homophilic cell-cell adhesion (GO:0007156)membrane (GO:0016020)plasma membrane (GO:0005886)plasma membrane (GO:0005886)

Expression (TPM)

TFs regulating CDH24 0 TFs

Transcription factors with Perturb-seq knockdown data for CDH24. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = CDH24 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

TF	Mean coef	Binding	Outlier	TF→Gene link

Rows:

Elements linked to CDH24

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of CDH24, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Element	Dist. to TSS	Link type	TFs
chr14:22,766,419–22,767,375	290.9 kb	Distal (>10kb) Multiome	988
chr14:22,821,826–22,823,530	234.6 kb	Distal (>10kb) Multiome	649
chr14:22,829,704–22,830,328	227.6 kb	Distal (>10kb) Multiome	871
chr14:22,836,107–22,837,017	221.1 kb	Distal (>10kb) Multiome	320
chr14:22,852,845–22,853,709	204.3 kb	Distal (>10kb) Multiome	788
chr14:22,870,967–22,873,202	185.9 kb	Distal (>10kb) Multiome	1167
chr14:22,882,594–22,883,886	174.4 kb	Distal (>10kb) Multiome	289
chr14:22,886,371–22,887,824	170.3 kb	Distal (>10kb) Multiome	639
chr14:22,918,527–22,919,975	138.2 kb	Distal (>10kb) Multiome	641
chr14:22,928,961–22,930,849	128.0 kb	Distal (>10kb) Multiome	1108
chr14:22,956,530–22,957,512	100.5 kb	Distal (>10kb) Multiome	983
chr14:22,981,215–22,983,249	74.8 kb	Distal (>10kb) Multiome HiCAR	935
chr14:23,006,674–23,007,583	50.4 kb	Distal (>10kb) Multiome	1097
chr14:23,020,642–23,021,291	36.6 kb	Distal (>10kb) Multiome	148
chr14:23,101,326–23,101,861	44.1 kb	Distal (>10kb) Multiome	83
chr14:23,154,159–23,154,639	96.9 kb	Distal (>10kb) Multiome	392
chr14:23,161,040–23,161,530	103.8 kb	Distal (>10kb) Multiome	397
chr14:23,182,495–23,182,942	125.2 kb	Distal (>10kb) Multiome	139
chr14:23,237,732–23,238,192	180.4 kb	Distal (>10kb) Multiome	536
chr14:23,285,641–23,286,830	228.7 kb	Distal (>10kb) Multiome	962
chr14:23,300,944–23,303,002	244.1 kb	Distal (>10kb) Multiome	1096
chr14:23,306,324–23,307,321	249.2 kb	Distal (>10kb) Multiome	871
chr14:23,320,558–23,322,196	263.7 kb	Distal (>10kb) Multiome	1090
chr14:23,351,817–23,353,063	295.3 kb	Distal (>10kb) Multiome	403

Genome Browser

Genomic view of the CDH24 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.