CALY
calcyon neuron specific vesicular protein | CALCYON, NSG3, DRD1IP
CALY — as a Regulated Gene

TFs regulating CALY 0 TFs

Transcription factors with Perturb-seq knockdown data for CALY. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = CALY upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to CALY

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of CALY, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr10:133,318,523–133,319,017 7.2 kb Proximal (<10kb) 567
chr10:133,324,203–133,325,065 1.1 kb Proximal (<10kb) 243
chr10:133,325,559–133,326,288 at TSS At TSS 162
chr10:133,329,452–133,330,224 3.3 kb Proximal (<10kb) 471

Genome Browser

Genomic view of the CALY locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr10:133,308,523 – 133,340,224
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq