Transcription factors with Perturb-seq knockdown data for BRD3OS. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = BRD3OS upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of BRD3OS, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr9:133,738,059–133,738,688 | 287.2 kb | Distal (>10kb) Multiome | 451 | |
| chr9:133,991,125–133,993,807 | 32.7 kb | Distal (>10kb) Multiome | 819 | |
| chr9:134,024,630–134,026,342 | 246 bp | At TSS Multiome | 742 | |
| chr9:134,067,300–134,068,908 | 42.8 kb | Distal (>10kb) Multiome | 721 | |
| chr9:134,135,166–134,136,822 | 110.5 kb | Distal (>10kb) Multiome | 790 |
Genomic view of the BRD3OS locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.