Transcription factors with Perturb-seq knockdown data for BICRA-AS2. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = BICRA-AS2 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of BICRA-AS2, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr19:47,600,223–47,600,983 | 7.7 kb | Proximal (<10kb) | 807 | |
| chr19:47,607,980–47,609,479 | at TSS | At TSS | 832 | |
| chr19:47,610,118–47,610,553 | 1.4 kb | Proximal (<10kb) | 468 | |
| chr19:47,613,212–47,613,473 | 4.5 kb | Proximal (<10kb) | 97 |
Genomic view of the BICRA-AS2 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.