Transcription factors with Perturb-seq knockdown data for B3GAT1-DT. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = B3GAT1-DT upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of B3GAT1-DT, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr11:134,223,679–134,225,624 | 188.2 kb | Distal (>10kb) Multiome | 944 | |
| chr11:134,252,809–134,254,050 | 158.9 kb | Distal (>10kb) Multiome | 758 | |
| chr11:134,272,860–134,273,509 | 139.2 kb | Distal (>10kb) Multiome | 183 | |
| chr11:134,275,655–134,277,823 | 135.8 kb | Distal (>10kb) Multiome | 418 | |
| chr11:134,331,384–134,332,745 | 80.4 kb | Distal (>10kb) Multiome | 483 | |
| chr11:134,360,067–134,360,637 | 51.9 kb | Distal (>10kb) Multiome | 397 | |
| chr11:134,411,283–134,413,029 | 111 bp | At TSS Multiome | 258 |
Genomic view of the B3GAT1-DT locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.