This locus represents naturally-occurring readthrough transcription between multiple unprocessed pseudogene loci. Readthrough transcripts likely do not encode functional proteins. [provided by RefSeq, Dec 2016]
Transcription factors with Perturb-seq knockdown data for ARHGAP27P1-BPTFP1-KPNA2P3. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = ARHGAP27P1-BPTFP1-KPNA2P3 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of ARHGAP27P1-BPTFP1-KPNA2P3, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr17:64,773,965–64,774,847 | 6.8 kb | Proximal (<10kb) | 481 | |
| chr17:64,776,631–64,777,384 | 4.2 kb | Proximal (<10kb) | 616 | |
| chr17:64,778,215–64,779,097 | 2.5 kb | Proximal (<10kb) | 185 | |
| chr17:64,779,868–64,781,331 | 294 bp | At TSS | 287 | |
| chr17:64,781,500–64,781,891 | at TSS | At TSS | 126 |
Genomic view of the ARHGAP27P1-BPTFP1-KPNA2P3 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.