Transcription factors with Perturb-seq knockdown data for AP1G2-AS1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = AP1G2-AS1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of AP1G2-AS1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr14:23,550,782–23,552,258 | 8.8 kb | Proximal (<10kb) | 826 | |
| chr14:23,555,640–23,556,485 | 4.6 kb | Proximal (<10kb) | 983 | |
| chr14:23,562,803–23,563,028 | 1.7 kb | Proximal (<10kb) | 238 | |
| chr14:23,567,065–23,567,976 | 6.0 kb | Proximal (<10kb) | 855 | |
| chr14:23,568,814–23,569,020 | 7.7 kb | Proximal (<10kb) | 202 |
Genomic view of the AP1G2-AS1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.