Predicted to be located in membrane. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for ANKRD29. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = ANKRD29 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of ANKRD29, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr18:23,437,346–23,438,074 | 225.0 kb | Distal (>10kb) Multiome | 628 | |
| chr18:23,452,793–23,453,775 | 209.6 kb | Distal (>10kb) Multiome | 796 | |
| chr18:23,502,975–23,503,998 | 159.4 kb | Distal (>10kb) Multiome | 907 | |
| chr18:23,586,020–23,587,174 | 76.1 kb | Distal (>10kb) Multiome | 908 | |
| chr18:23,618,918–23,619,643 | 43.6 kb | Distal (>10kb) Multiome | 295 | |
| chr18:23,662,307–23,663,058 | 62 bp | At TSS Multiome | 349 | |
| chr18:23,689,205–23,690,311 | 26.9 kb | Distal (>10kb) Multiome | 469 |
Genomic view of the ANKRD29 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.