chr7 : 55,582,575 – 55,582,899
324 bp 2 TFs 1 linked gene
This 324 bp open chromatin element is linked to VOPP1-DT and is bound by SMAD2_3 and SOX17.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
VOPP1-DT 9.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:55,577,575 – 55,587,899
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
2 transcription factors
Source
Cell type
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 324 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 324 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 324 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 324 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 324 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 214 bp overlap
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